Deciphering key intermediates Collection home page

The identification of catalytic intermediates in the conversion of carbon dioxide is vital for improved catalyst design and optimization of structure–reactivity relationships, but remains elusive. Here, we report that intermolecular hydrogen bonding interactions between an epoxy alcohol, water and the catalyst structure are crucial towards the formation of a cyclic carbonate from carbon dioxide. A combination of multiple in situ and ex situ techniques including substrate labelling, kinetic studies, computational analysis, operando infrared spectroscopy and X-ray diffraction was applied to identify and support the structural connectivities of several previously unknown intermediates. An epoxy alcohol–water cluster formed by hydrogen bonding was identified as the initial intermediate able to trap CO2 and an elusive alkyl carbonate anion was also detected. The synergistic spectroscopic and computational analysis shown here offers a unique insight under operando conditions, as well as a useful analytical blueprint for key suggested intermediates in other mechanistically related CO2 conversion processes.

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Please use this identifier to cite or link to this collection: DOI: 10.19061/iochem-bd-1-58

This dataset derived results are published in:

Manuscript title: Deciphering key intermediates in the transformation of carbon dioxide into heterocyclic products

Journal: Nature Catalysis

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    • ROOT
      • Extra_Calculations
        • Alcohol_AcidityAnalysis
          • Catalyst
          • Ep_Alkoxide
          • Free_Alkoxide
            • FAIL
            • Frozen
          • Glycidol
          • H_Cat
          • Hydronium
          • Hydroxide
          • IC
          • Water
        • Aldehyde
          • Int
            • No_H
        • CCSD
          • IC
          • TS
        • CyclohexeneOx_Tests
          • Al_OH2
          • Before
            • Scan2
              • Frozen_OH
                • Zoom
                  • Guess
                    • Frozen
                      • Opt
                    • TS
              • Zoom
                • Frozen_OH
                • Next
          • From_Back
            • Scan
              • Zoom1
              • Zoom2
              • Zoom3
          • Frozen_FromTS
        • DFTAnalysis_Concerted_TS_CC
          • B3LYP_D3
            • DZP
              • Guess
            • IC
            • Reactants
              • Al
              • CO2
              • Glycidol
              • Water
          • B3LYP_D3BJ
            • IC
            • Reactants
              • Al
              • CO2
              • Glycidol
              • Water
          • B97_EmpD3
            • IC
            • Reactants
              • Al
              • CO2
              • Glycidol
              • Water
            • TS
              • Freq
          • BP86
            • IC
            • Reactants
              • Al
              • CO2
              • Glycidol
              • Water
          • Bp86_D3
            • DZP
            • IC
            • Reactants
              • Al
              • CO2
              • Glycidol
              • Water
          • M06
            • IC
            • Reactants
              • Al
              • CO2
              • Glycidol
              • Water
          • M062X
            • IC
            • Reactants
              • Al
              • CO2
              • Glycidol
              • Water
            • TS
          • wB97xD
            • Down
              • Down_FAIL
              • Down_H2O
                • FAIL
                • Frozen2
                • Frozen3
                  • Opt_FAIL
              • Scan_Down
                • B97D3
                • wB97XD_FAIL
              • Scan_Down2
                • B97d3
                  • FAIL2
                  • Scan2_FAIL
                  • Scan3
                  • Scan4_FAIL
                • FAIL
            • FAIL
            • Freq_FAIL
              • Opt
            • Frozen
              • Opt_FAIL
            • Frozen_CO2_FAIL
            • Scan_2D
              • FAIL
              • TS
                • Guess_Freq
                • TZ2P
                  • Scan
                    • Zoom
        • Dimer
          • Alkoxide
          • Alkoxide_1
          • CC
          • CC_H
          • Carbonate
            • Frozen
          • Carbonate_2
          • Dimer
          • Ensemble
          • IC
        • Epoxide_Isomerization
          • Alk_Isom
            • Zoom
              • Zoom
                • Guess_TS_FAIL
                • TS_Frozen_FAIL
                  • Frozen2_FAIL
          • FAIL
        • IC_Isomerization
          • Alkoxide
            • Zoom
              • Zoom_Zoom
                • Back
                • Forward
                  • Guess
                    • Frozen_FAIL
                    • Opt_FAIL
          • Alkoxide2
            • Zoom
          • Zoom
            • Guess_FromScan
            • Guess_Modified
        • Ligand_BasicityAnalysis
          • Al_OH
          • Al_OH2
          • Guess_TS_H
            • Guess
          • TS_H
        • M06_2X_Tests
          • Al
          • CO2
          • Glycidol
          • IC_M062X
          • TS_M062X
          • Water
        • NBO
          • Alkoxide
          • IC
        • O_Al_BondAnalysis
          • Ep
            • Ep
          • Ox
            • Ox
          • THF
            • THF
        • Protonated_Cat
          • B97D3
          • wB97xD
        • TS_PM6
        • tBu_Ligand
          • Carbonate_tBu
            • Relaxed
          • Cat_tBu
          • Dimer_tBu
      • Mechanisms
        • Alternative_Mechanisms
          • Chelate_EpOH
            • 1Al_Oh
              • Chelate
              • Ensemble
                • Prev_Frozen
              • Post
              • Scan
                • Next
                  • Reverse_FAIL
                • Relaxed
                • Zoom
                  • Guess_FAIL
                  • Relaxed_FAIL
              • Scan_2D
                • Freq
                  • OPT2_FAIL
                  • OPT_FAIL
                • Guess
                  • Opt
                • Scan_1D
                  • Guess
                    • Restart
                • Zoom_SmallBasis
                  • Guess
                    • Opt
              • Scan_H
                • Zoom
              • Scan_Insertion
              • Scan_Isom
              • TS_2
                • Freq
                  • Frozen
              • TS_Freq
                • OPT
              • TS_H
                • CC
              • TS_isom
            • 1Al_Oh_Ep
              • Alkoxide
              • Chelate
              • Ensemble
              • Hemi_Carb
                • Frozen
              • IC
              • Scan_H
                • Next
              • Scan_H2
                • Zoom
              • Scan_Insertion
          • Open_Ligand
            • Alkoxide
            • Alkoxide_OL
            • CC
            • Carbonate
              • Scan2
                • Next
              • Scan_FC_FAIL
                • Zoom
            • Carbonate2_FAIL
            • Carbonate_Oh
              • Restart
              • Scan_FAIL
                • Guess_FAIL
                • Zoom
            • Ensemble
            • Scan_CC
              • Guess_FAIL
              • Zoom
                • Guess_FAIL
                • Zoom_FAIL
            • Scan_Insertion
              • Zoom
            • TS_CC
              • Guess
                • Opt
            • TS_CC_Tests
              • TS
                • Freq
                • TZDP
                  • After
                  • Before
              • TS_H
                • After
                • Before
                • Freq
                • TZDP
            • TS_Insertion
              • Guess
                • Opt
        • No_Al
          • Uncatalyzed
            • Bicarb_Ep
            • COOH
            • Carb_Ep
            • Ensemble
            • Ep_Ep
            • Product
            • Scans
              • Scan_2
                • Zoom
              • Scan_2D
              • Scan_2_2
                • FAIL
              • Scan_2_5
                • Zoom
              • Scan_2_6
              • Scan_FC_Ep
                • 2Ep
            • TS
              • Scan
              • Scan2
              • Scan3
              • TS_Guess
                • Frozen
              • TS_Guess2
              • TS_Guess3
          • Water_Catalyzed
            • Ensemble_Wat
              • Scan
              • TS_Guess
                • Guess
                • Guess2
            • Product_Water
            • Scans
              • Scan_2Water_CC
                • Frozen
              • Scan_Water
              • Scan_Water_CC
              • Scan_Water_CC2
                • Zoom
              • Scan_Water_CC3
                • Ensemble
                • Guess
                  • Guess
                  • TZDP
                    • After
            • TS_CC_2Water
              • TZDP
                • After
            • TS_Water
              • After_COOH
              • Before
              • Freq
        • OEp_Insertion
          • Bimetallic
            • Alkoxide
            • Carbonate
            • Ensemble
            • Ensemble_CC
            • Ensemble_CO2
            • L_Carbonate
              • Alter
            • Scan_CC
            • Scan_CC2
              • Zoom
            • Scan_CC3
              • Guess
            • Scan_CC4
              • Next
            • Scan_Insertion
            • Scan_Insertion2
              • Guess
                • Freq
              • Zoom
                • Guess
            • Scan_Isom
              • Guess
                • opt
            • Scan_RO
              • Guess1_FAIL
              • Zoom
            • TS_CC
            • TS_Insertion
              • FAIL
            • TS_Isom
            • TS_RO
          • Monometallic
            • Alkoxide
            • Carbonate
            • Carbonate2
            • Ensemble
              • iFreq
            • Glycidol_Alk
            • IC
            • Methyl_Model
              • Alkoxide
              • CC
              • Carbonate
              • Carbonate2
                • i_Freq
              • Ensemble
              • IC
              • Methanol
              • Methoxide
              • Scan_CC
                • Alter
                  • Next
              • Scan_Insertion
                • Guess
                • Next
              • Scan_Isom
                • Zoom
              • Scan_RO
                • Next
                • Scan_2D
              • TS_Insertion
              • TS_Isom
            • TS_Insertion
            • TS_Isom
        • OH_Insertion
          • Bimetallic
            • Carb_2Al
            • Ensemble
            • FC_2Al
              • 1_Al
            • FC_2Al_2Gly
              • Isom
                • Restart
            • FC_H_2Al
              • 1_Al
            • Lineal_Carbonate
            • Scan_Coord
              • Zoom
            • TS_FC_2Al
              • 1_Al
                • Post
              • Scan
                • Scan_Frozen
              • Scan2D
                • FAIL
            • TS_FC_H
              • 1_Al
            • TS_Insertion_2Al
          • Monometallic
            • OH_Insertion_Gly_coCat
              • CC_Ep
              • Carb_Ep
              • Carb_EpDown
              • Carbonate
                • Guess2
              • Carbonate_Isom
              • Scan
                • Frozen
                • Scan_F
              • Scan_CC2
                • Water
                  • Zoom
                  • Zoom2
              • Scan_CC3
                • Zoom
                  • Guess1_FAIL
                  • Guess2_FAIL
                    • OPT
                  • Guess3
                    • TS
              • Scan_CC4
                • No_Opt
              • Scan_Insertion
              • Scans_CC
                • Guess
                  • TS
                • Zoom
              • TS_CC
              • TS_Insertion
            • OH_Insertion_NoWater
              • Alkoxide
              • Carbonate
              • Carbonate_Isom
                • FAIL
                • Restart
              • Ensemble
              • FC
              • FC_H
              • HBonding
                • Freq
              • IC
              • Product
              • TS_FC
              • TS_FC_H
              • TS_H
              • TS_Insertion
            • OH_Insertion_SN1
              • Inversion
                • Aldehyde_Formation
                • CC_H2O
                • Carb_H2O
              • Retention
                • CC_H2O
                • Carb_H2O
                • TS_Isom
            • OH_Insertion_Water_SN2
              • Alkoxide
              • CC
              • Carbonate
              • Carbonate_Water
              • FC_H
              • IC
              • Product
              • TS_CC
                • No_Water
                • Water
              • TS_H
              • TS_Insertion
            • OH_Insertion__Water_Concerted
              • Alkoxide
              • CC
              • Carbonate
                • Frozen_Angle
                • Frozen_OAl
                • Frozen_OC
              • Ensemble
              • FC_H_Isom
              • IC
              • Linear_Carb
              • Linear_Carbonate_Water
              • Prod_Isom
                • Alk_FC
                • BnNH2
                  • Restart
                • BnNH3
                • CC_Alk
                • EnsembleBnN_OCC
                • Ep_Alk
                • Int
                • Prod_Isom
                • TS_H
                • TS_Isom
              • Product
              • Reactants
                • Al
                • CO2
                • Glycidol
                • Water
              • TS
                • Frozen
                  • FAIL
                  • Opt
                    • TS_Ins_CC
              • TS_H
            • Scans
              • Scan_Ep_H
              • Scan_FC
                • Zoom
              • Scan_FC2
                • Zoom
              • Scan_FC3
                • Freq
                  • Opt
                • Freq_Zoom
                • TZ2P
                • Zoom
              • Scan_FC_H_1Al
              • Scan_FC_H_2Al
              • Scan_FC_OH
              • Scan_FC_isom
                • Zoom
              • Scan_H
              • Scan_Insertion
                • Cont
                • Freq
                  • Opt
                • Test
              • Scan_Insertion_O
              • Scan_Insertion_OH
              • Scan_Insertion_OH2
              • Scan_Isomerisation
                • Zoom
              • Scan_Isomerisation2
        • Reactants
          • Al
          • CO2
          • Glycidol
            • Density
          • MEK
          • Water
        • Side_Intermediates
          • Carb_Free_NoH
            • Scan_CC
          • Carb_HBond_HL_OEp
          • Carb_HBond_OC_HL
          • Carb_HBond_OEp_HL
            • Scan_CC
              • Zoom
          • Carb_HOep
          • Ens_Chelate_CO2
            • CO2_Bonded_Frozen
          • Ens_IC_Ep_CO2
          • Ens_IC_OH_CO2
          • HCarb_HBond_Ligand
            • Scan_CC
              • Zoom
                • Scan_2Coord
                  • Zoom
          • HCarb_HLigand
          • OH_Insertion_2Al
            • Scan_GlyCoord
          • TS_CC_Down_OH
            • From_Frozen
            • Modified_631G
          • TS_CC_FreeAlk
            • Guess
          • TS_Isom_Alk
            • Guess
      • NMR_IR
        • IR
          • BP86
            • Acid
            • CarbH_Eq
            • Carbonate
            • Carbonate_Water
              • HCarb_Water
                • Frozen
            • Carbonate_Water_NoAl
            • HCarb
            • HCarb2
            • Linear_Carbonate_Water
            • Product
            • TBDH_HCO3
              • Freq
              • Opt_Freq
            • TBD_CO2
              • Freq
              • Opt_Freq
            • Water
          • wB97xD
            • CarbH_Ax
            • CarbH_Eq
              • Restart
            • HCarb
              • B3LYP
              • BP86
              • Cyclohexane
              • Free
              • Gas
            • HCarb2
              • H_Bond
                • Frozen
                  • Opt
              • No_H
            • HCarb_Water
            • Product
              • B3LYP
              • BP86
              • Cyclohexane
              • Gas
              • wB97xD
        • NMR
          • B3LYP
            • OH
              • Glycidol
                • Glycidol_2
                  • NMR
                • Glycidol_3
                  • NMR
                • NMR
                • Opt
              • IC
                • IC_2
                  • Opt
                • IC_3
                  • Opt
                • NMR
                • Opt
                • Rot_3
                  • 10
                  • 11
                • Rot_4
                  • 10
                  • 11
            • OMe
              • Glycidol_Me
                • Glycidol_2
                  • NMR
                • Glycidol_3
                  • NMR
                • NMR
                • Opt
              • IC_Me
                • IC_Me_2
                  • Opt
                • IC_Me_3
                  • Opt
                • NMR
                • Opt
            • TMS
              • NMR
              • Opt
          • BP86
            • OH
              • Glycidol
                • Glycidol_2
                  • NMR
                • Glycidol_3
                  • NMR
                • NMR
                • Opt
              • IC
                • IC_2
                  • Opt
                • IC_3
                  • Opt
                • NMR
                • Opt
            • OMe
              • Glycidol_Me
                • Glycidol_2
                  • NMR
                • Glycidol_3
                  • NMR
                • NMR
                • Opt
              • IC_Me
                • IC_Me_2
                  • Opt
                • IC_Me_3
                  • Opt
                • NMR
                • Opt
            • TMS
              • NMR
              • Opt
          • wB97xD
            • OH
              • Glycidol
                • NMR
                • Opt
              • IC
                • Butanone
                • NMR
                • Opt
            • OMe
              • Glycidol_Me
                • NMR
                • Opt
              • IC_Me
                • NMR
                • Opt
            • TMS
              • NMR
              • Opt
      • Racemization
        • BnNH2
        • BnNH3
        • CC_Alk
        • Ensemble
        • EnsembleBn_OCC
        • Ep_Alk
        • From6RingTo5
          • Al_Cat
            • CO2_Insertion
              • TS_CC
                • Next
                • TS_Ax
                • TS_Eq
              • TS_H
                • FC
                • FC_H
                • TS_FC_H
              • TS_Insertion
                • After
                • Before
                • Scan
                • TS_Insertion
            • No_CO2
              • FC_Alter
              • FC_H
              • Scan
                • Zoom
              • Scan_Alter
          • No_Cat
            • After
            • Before
          • Product_5
          • Product_6
        • Int
        • Prod
        • Prod_H
        • Scan1
        • Scan2
          • Prod
        • Scan2_2
          • Next
          • TZDP
        • Scan_H
          • TS_FAIL
        • TS_H
          • Alk_FC
          • Scan
            • DZP
              • Zoom_TZDP
            • Killed
          • TS
        • TS_Rac
          • Freq
          • Int_Rac
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